Current version: 1.1 (March 14, 2007)
Operating System: Platform independent
License: Public domain software
Requirements: Java Runtime
Environment (JRE), which is probably on your machine. Currently,
CRT only supports FASTA file format.
and unzip the file to a folder. (The extracted file should be
Double-click the extracted file. (Or, at the
command line type: java -jar CRT1.1_exe.jar)
Please, click here
if the above instructions do not work.
Line Interface (CLI)
Updated (June 12, 2008):
Uses a more unix-like command line interface; allows reading of files
from any directory
and unzip the
file to a folder. (The extracted file should be
command line type: java -cp CRT1.2-CLI.jar
crt [options] inputFile [outputFile]
click here for a more detailed description of
the command line interface.
Please, click here if the above
instructions do not work.
Report any bugs, questions or
suggestions to: bland.charles<insert at symbol>gmail.com
Also, I would be interested to hear
about any projects that use CRT.
Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, Hugenholtz
CRISPR Recognition Tool (CRT): a tool
for automatic detection of clustered regularly interspaced palindromic
repeats. BMC Bioinformatics.
2007 Jun 18;8(1):209